HL_9PJ8_043

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

9PJ8|1|a|A|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_043 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1284

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9PJ8|1|a|C|390
9PJ8|1|a|U|391
9PJ8|1|a|G|392
9PJ8|1|a|G|393
9PJ8|1|a|G|394
9PJ8|1|a|A|395
9PJ8|1|a|A|396
9PJ8|1|a|G|397

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

Large ribosomal subunit protein uL24