HL_9PJ8_063

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

9PJ8|1|a|A|1178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_063 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.416

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PJ8|1|a|C|1175
9PJ8|1|a|G|1176
9PJ8|1|a|U|1177
9PJ8|1|a|A|1178
9PJ8|1|a|A|1179
9PJ8|1|a|U|1180
9PJ8|1|a|A|1181
9PJ8|1|a|G|1182

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6