HL_9PJ8_067

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUUGUC

Length

7 nucleotides

Bulged bases

9PJ8|1|a|U|1401, 9PJ8|1|a|U|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_067 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1475

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9PJ8|1|a|G|1400
9PJ8|1|a|U|1401
9PJ8|1|a|U|1402
9PJ8|1|a|U|1403
9PJ8|1|a|G|1404
9PJ8|1|a|U|1405
9PJ8|1|a|C|1406

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

50S ribosomal protein L22