HL_9PJ8_083

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9PJ8|1|a|U|2138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_083 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1239

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PJ8|1|a|G|2132
9PJ8|1|a|G|2133
9PJ8|1|a|U|2134
9PJ8|1|a|A|2135
9PJ8|1|a|A|2136
9PJ8|1|a|G|2137
9PJ8|1|a|U|2138
9PJ8|1|a|U|2139
9PJ8|1|a|C|2140

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14