HL_9PJ8_089

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ8_089 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.2022

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9PJ8|1|a|U|2506
9PJ8|1|a|G|2507
9PJ8|1|a|U|2508
9PJ8|1|a|A|2509
9PJ8|1|a|A|2510
9PJ8|1|a|G|2511
9PJ8|1|a|U|2512
9PJ8|1|a|G|2513

Current chains

Chain a

23S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27