HL_9PJ9_023

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9PJ9|1|A|G|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_023 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.1981

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9PJ9|1|A|G|1074
9PJ9|1|A|U|1075
9PJ9|1|A|U|1076
9PJ9|1|A|A|1077
9PJ9|1|A|A|1078
9PJ9|1|A|G|1079
9PJ9|1|A|U|1080
9PJ9|1|A|C|1081

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S7