HL_9PJ9_037

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGUAGUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_037 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.1983

The information below is about HL_5AOX_001

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PJ9|1|a|A|141
9PJ9|1|a|G|142
9PJ9|1|a|U|143
9PJ9|1|a|A|144
9PJ9|1|a|G|145
9PJ9|1|a|U|146
9PJ9|1|a|G|147
9PJ9|1|a|U|148

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23

Chain x

50S ribosomal protein L29