HL_9PJ9_043

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

9PJ9|1|a|A|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_043 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1244

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9PJ9|1|a|C|390
9PJ9|1|a|U|391
9PJ9|1|a|G|392
9PJ9|1|a|G|393
9PJ9|1|a|G|394
9PJ9|1|a|A|395
9PJ9|1|a|A|396
9PJ9|1|a|G|397

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24