HL_9PJ9_045
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGAGAGUC
- Length
- 9 nucleotides
- Bulged bases
- 9PJ9|1|a|G|414, 9PJ9|1|a|A|415, 9PJ9|1|a|G|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ9_045 not in the Motif Atlas
- Homologous match to HL_7A0S_012
- Geometric discrepancy: 0.3591
- The information below is about HL_7A0S_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.5
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 17
Unit IDs
9PJ9|1|a|G|412
9PJ9|1|a|U|413
9PJ9|1|a|G|414
9PJ9|1|a|A|415
9PJ9|1|a|G|416
9PJ9|1|a|A|417
9PJ9|1|a|G|418
9PJ9|1|a|U|419
9PJ9|1|a|C|420
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: