HL_9PJ9_066
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGGGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ9_066 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.0898
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9PJ9|1|a|G|1357
9PJ9|1|a|U|1358
9PJ9|1|a|G|1359
9PJ9|1|a|G|1360
9PJ9|1|a|G|1361
9PJ9|1|a|A|1362
9PJ9|1|a|A|1363
9PJ9|1|a|U|1364
9PJ9|1|a|C|1365
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- 50S ribosomal protein L22
Coloring options: