HL_9PJ9_074

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACACUG

Length

8 nucleotides

Bulged bases

9PJ9|1|a|A|1798, 9PJ9|1|a|A|1800, 9PJ9|1|a|U|1802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_074 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1487

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9PJ9|1|a|C|1796
9PJ9|1|a|G|1797
9PJ9|1|a|A|1798
9PJ9|1|a|C|1799
9PJ9|1|a|A|1800
9PJ9|1|a|C|1801
9PJ9|1|a|U|1802
9PJ9|1|a|G|1803

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22