HL_9PJ9_082

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9PJ9|1|a|A|2096

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_082 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1088

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PJ9|1|a|G|2093
9PJ9|1|a|PSU|2094
9PJ9|1|a|A|2095
9PJ9|1|a|A|2096
9PJ9|1|a|C|2097
9PJ9|1|a|3TD|2098
9PJ9|1|a|A|2099
9PJ9|1|a|PSU|2100
9PJ9|1|a|A|2101
9PJ9|1|a|A|2102
9PJ9|1|a|C|2103

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Transfer RNA; tRNA

Chain Y

mRNA 32MF