HL_9PJ9_099
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9PJ9|1|a|G|2933, 9PJ9|1|a|C|2937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ9_099 not in the Motif Atlas
- Homologous match to HL_7A0S_065
- Geometric discrepancy: 0.2132
- The information below is about HL_7A0S_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.3
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9PJ9|1|a|C|2927
9PJ9|1|a|U|2928
9PJ9|1|a|G|2929
9PJ9|1|a|A|2930
9PJ9|1|a|A|2931
9PJ9|1|a|A|2932
9PJ9|1|a|G|2933
9PJ9|1|a|C|2934
9PJ9|1|a|A|2935
9PJ9|1|a|U|2936
9PJ9|1|a|C|2937
9PJ9|1|a|U|2938
9PJ9|1|a|A|2939
9PJ9|1|a|A|2940
9PJ9|1|a|G|2941
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain i
- 50S ribosomal protein L13
Coloring options: