HL_9PJ9_100

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGUGUUC

Length

8 nucleotides

Bulged bases

9PJ9|1|a|U|2979, 9PJ9|1|a|G|2980, 9PJ9|1|a|U|2981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ9_100 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.3763

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9PJ9|1|a|G|2976
9PJ9|1|a|A|2977
9PJ9|1|a|G|2978
9PJ9|1|a|U|2979
9PJ9|1|a|G|2980
9PJ9|1|a|U|2981
9PJ9|1|a|U|2982
9PJ9|1|a|C|2983

Current chains

Chain a

23S rRNA

Nearby chains