HL_9PKB_066

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PKB_066 not in the Motif Atlas

Homologous match to HL_9PN5_056

Geometric discrepancy: 0.1612

The information below is about HL_9PN5_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PKB|1|L5|U|4301
9PKB|1|L5|U|4302
9PKB|1|L5|C|4303
9PKB|1|L5|A|4304
9PKB|1|L5|G|4305
9PKB|1|L5|OMU|4306
9PKB|1|L5|A|4307
9PKB|1|L5|C|4308
9PKB|1|L5|G|4309

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a