Motif HL_15296.4 Version HL_15296.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9H3G_059 | 9H3G | 0.1735 | 0 | A | LSU rRNA | U | 2723 | U | 2724 | C | 2725 | A | 2726 | G | 2727 | U | 2728 | A | 2729 | C | 2730 | G | 2731 | cWW | ntSH |
| 2 | HL_8GLP_063 | 8GLP | 0.1495 | 0 | L5 | LSU rRNA | U | 4301 | U | 4302 | C | 4303 | A | 4304 | G | 4305 | OMU | 4306 | A | 4307 | C | 4308 | G | 4309 | cWW | |
| 3 | HL_9PN5_056 | 9PN5 | 0.0000 | 0 | A1 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | |
| 4 | HL_8OI5_054 | 8OI5 | 0.0854 | 0 | 1 | LSU rRNA | U | 2696 | U | 2697 | C | 2698 | A | 2699 | G | 2700 | U | 2701 | G | 2702 | U | 2703 | G | 2704 | cWW | |
| 5 | HL_9SUM_051 | 9SUM | 0.0715 | 0 | A | LSU rRNA | U | 2624 | U | 2625 | C | 2626 | A | 2627 | G | 2628 | U | 2629 | G | 2630 | U | 2631 | G | 2632 | cWW | |
| 6 | HL_9AXU_054 | 9AXU | 0.1100 | 0 | 2 | LSU rRNA | U | 2819 | U | 2820 | C | 2821 | A | 2822 | G | 2823 | U | 2824 | G | 2825 | U | 2826 | G | 2827 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 4 |
| UUCAGUACG | 1 |
| UUCAGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 4 |
| UCAGUAC | 1 |
| UCAG(OMU)AC | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.12 | Max 0.24
Coloring options: