HL_9PKG_009

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9PKG|1|L5|G|315, 9PKG|1|L5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PKG_009 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.069

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9PKG|1|L5|G|314
9PKG|1|L5|G|315
9PKG|1|L5|U|316
9PKG|1|L5|A|317
9PKG|1|L5|A|318
9PKG|1|L5|A|319
9PKG|1|L5|C|320
9PKG|1|L5|U|321
9PKG|1|L5|C|322
9PKG|1|L5|C|323

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a