9PKG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9PKG_001 | 1/L5/37:44 | No text annotation | ||
| HL_9PKG_002 | 1/L5/68:73 | No text annotation | ||
| HL_9PKG_003 | 1/L5/89:95 | No text annotation | ||
| HL_9PKG_005 | 1/L5/204:211 | No text annotation | ||
| HL_9PKG_006 | 1/L5/222:226 | No text annotation | ||
| HL_9PKG_007 | 1/L5/230:238 | No text annotation | ||
| HL_9PKG_008 | 1/L5/289:298 | No text annotation | ||
| HL_9PKG_009 | 1/L5/314:323 | No text annotation | ||
| HL_9PKG_010 | 1/L5/368:373 | No text annotation | ||
| HL_9PKG_011 | 1/L5/393:398 | No text annotation | ||
| HL_9PKG_014 | 1/L5/1169:1192 | No text annotation | ||
| HL_9PKG_016 | 1/L5/1317:1326 | No text annotation | ||
| HL_9PKG_017 | 1/L5/1364:1373 | No text annotation | ||
| HL_9PKG_018 | 1/L5/1389:1394 | No text annotation | ||
| HL_9PKG_020 | 1/L5/1436:1448 | No text annotation | ||
| HL_9PKG_021 | 1/L5/1480:1484 | No text annotation | ||
| HL_9PKG_022 | 1/L5/1561:1566 | No text annotation | ||
| HL_9PKG_023 | 1/L5/1593:1602 | No text annotation | ||
| HL_9PKG_024 | 1/L5/1627:1635 | No text annotation | ||
| HL_9PKG_025 | 1/L5/1675:1680 | No text annotation | ||
| HL_9PKG_027 | 1/L5/1816:1823 | No text annotation | ||
| HL_9PKG_028 | 1/L5/1864:1870 | No text annotation | ||
| HL_9PKG_029 | 1/L5/1886:1893 | No text annotation | ||
| HL_9PKG_033 | 1/L5/2257:2261 | No text annotation | ||
| HL_9PKG_034 | 1/L5/2317:2322 | No text annotation | ||
| HL_9PKG_035 | 1/L5/2376:2384 | No text annotation | ||
| HL_9PKG_036 | 1/L5/2420:2426 | No text annotation | ||
| HL_9PKG_037 | 1/L5/2458:2463 | No text annotation | ||
| HL_9PKG_038 | 1/L5/2469:2471 | No text annotation | ||
| HL_9PKG_040 | 1/L5/2523:2532 | No text annotation | ||
| HL_9PKG_042 | 1/L5/2578:2583 | No text annotation | ||
| HL_9PKG_043 | 1/L5/2624:2632 | No text annotation | ||
| HL_9PKG_044 | 1/L5/2664:2670 | No text annotation | ||
| HL_9PKG_045 | 1/L5/2705:2710 | No text annotation | ||
| HL_9PKG_046 | 1/L5/2738:2742 | No text annotation | ||
| HL_9PKG_047 | 1/L5/2792:2799 | No text annotation | ||
| HL_9PKG_048 | 1/L5/2810:2816 | No text annotation | ||
| HL_9PKG_049 | 1/L5/2872:2877 | No text annotation | ||
| HL_9PKG_052 | 1/L5/3614:3618 | No text annotation | ||
| HL_9PKG_053 | 1/L5/3639:3649 | No text annotation | ||
| HL_9PKG_054 | 1/L5/3668:3674 | No text annotation | ||
| HL_9PKG_055 | 1/L5/3724:3729 | No text annotation | ||
| HL_9PKG_056 | 1/L5/3757:3767 | No text annotation | ||
| HL_9PKG_057 | 1/L5/3796:3804 | No text annotation | ||
| HL_9PKG_058 | 1/L5/3873:3882 | No text annotation | ||
| HL_9PKG_062 | 1/L5/4193:4201 | No text annotation | ||
| HL_9PKG_063 | 1/L5/4210:4222 | No text annotation | ||
| HL_9PKG_064 | 1/L5/4250:4258 | No text annotation | ||
| HL_9PKG_065 | 1/L5/4270:4277 | No text annotation | ||
| HL_9PKG_066 | 1/L5/4301:4309 | No text annotation | ||
| HL_9PKG_067 | 1/L5/4321:4326 | No text annotation | ||
| HL_9PKG_068 | 1/L5/4352:4362 | No text annotation | ||
| HL_9PKG_069 | 1/L5/4417:4425 | No text annotation | ||
| HL_9PKG_070 | 1/L5/4474:4481 | No text annotation | ||
| HL_9PKG_071 | 1/L5/4497:4503 | No text annotation | ||
| HL_9PKG_072 | 1/L5/4540:4545 | No text annotation | ||
| HL_9PKG_073 | 1/L5/4603:4608 | No text annotation | ||
| HL_9PKG_074 | 1/L5/4646:4651 | No text annotation | ||
| HL_9PKG_075 | 1/L5/4688:4702 | No text annotation | ||
| HL_9PKG_077 | 1/L5/4907:4914 | No text annotation | ||
| HL_9PKG_078 | 1/L5/4975:4983 | No text annotation | ||
| HL_9PKG_080 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.1 | |
| HL_9PKG_081 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.2 | |
| HL_9PKG_082 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.4 | |
| HL_9PKG_083 | 1/L8/47:56 | No text annotation | ||
| HL_9PKG_084 | 1/L8/68:90 | No text annotation | ||
| HL_9PKG_085 | 1/L8/107:112 | No text annotation | ||
| HL_9PKG_088 | 1/Pt/31:39 | tRNA anticodon loop | homologous HL_4WT8_216 HL_81376.3 | |
| HL_9PKG_090 | 1/S2/7:17 | No text annotation | ||
| HL_9PKG_094 | 1/S2/288:295 | No text annotation | ||
| HL_9PKG_096 | 1/S2/377:387 | No text annotation | ||
| HL_9PKG_098 | 1/S2/441:452 | No text annotation | ||
| HL_9PKG_099 | 1/S2/462:467 | No text annotation | ||
| HL_9PKG_103 | 1/S2/618:623 | No text annotation | ||
| HL_9PKG_105 | 1/S2/820:828 | No text annotation | ||
| HL_9PKG_106 | 1/S2/833:841 | No text annotation | ||
| HL_9PKG_108 | 1/S2/957:966 | No text annotation | ||
| HL_9PKG_109 | 1/S2/994:999 | No text annotation | ||
| HL_9PKG_110 | 1/S2/1054:1064 | No text annotation | ||
| HL_9PKG_112 | 1/S2/1141:1146 | No text annotation | ||
| HL_9PKG_113 | 1/S2/1178:1183 | No text annotation | ||
| HL_9PKG_114 | 1/S2/1245:1254 | No text annotation | ||
| HL_9PKG_116 | 1/S2/1353:1358 | No text annotation | ||
| HL_9PKG_117 | 1/S2/1366:1373 | No text annotation | ||
| HL_9PKG_120 | 1/S2/1565:1570 | No text annotation | ||
| HL_9PKG_121 | 1/S2/1614:1625 | No text annotation | ||
| HL_9PKG_122 | 1/S2/1658:1666 | No text annotation | ||
| HL_9PKG_124 | 1/S2/1847:1852 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9PKG_004 | No text annotation | ||
| HL_9PKG_012 | No text annotation | ||
| HL_9PKG_013 | No text annotation | ||
| HL_9PKG_015 | No text annotation | ||
| HL_9PKG_019 | No text annotation | ||
| HL_9PKG_026 | No text annotation | ||
| HL_9PKG_030 | No text annotation | ||
| HL_9PKG_031 | No text annotation | ||
| HL_9PKG_032 | No text annotation | ||
| HL_9PKG_039 | No text annotation | ||
| HL_9PKG_041 | No text annotation | ||
| HL_9PKG_050 | No text annotation | ||
| HL_9PKG_051 | No text annotation | ||
| HL_9PKG_059 | No text annotation | ||
| HL_9PKG_060 | No text annotation | ||
| HL_9PKG_061 | No text annotation | ||
| HL_9PKG_076 | No text annotation | ||
| HL_9PKG_079 | No text annotation | ||
| HL_9PKG_086 | No text annotation | ||
| HL_9PKG_087 | No text annotation | ||
| HL_9PKG_089 | T-loop with 2 stacked bulged bases | ||
| HL_9PKG_091 | No text annotation | ||
| HL_9PKG_092 | No text annotation | ||
| HL_9PKG_093 | No text annotation | ||
| HL_9PKG_095 | No text annotation | ||
| HL_9PKG_097 | No text annotation | ||
| HL_9PKG_100 | No text annotation | ||
| HL_9PKG_101 | No text annotation | ||
| HL_9PKG_102 | No text annotation | ||
| HL_9PKG_104 | No text annotation | ||
| HL_9PKG_107 | No text annotation | ||
| HL_9PKG_111 | No text annotation | ||
| HL_9PKG_115 | No text annotation | ||
| HL_9PKG_118 | No text annotation | ||
| HL_9PKG_119 | No text annotation | ||
| HL_9PKG_123 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9PKG_001 | 1/L5/6:7, 1/L8/149:151 | No text annotation | ||
| IL_9PKG_002 | 1/L5/12:14, 1/L8/143:144 | No text annotation | ||
| IL_9PKG_003 | 1/L5/16:18, 1/L8/139:141 | No text annotation | ||
| IL_9PKG_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | ||
| IL_9PKG_005 | 1/L5/30:37, 1/L5/44:52 | No text annotation | ||
| IL_9PKG_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | ||
| IL_9PKG_007 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9PKG_008 | 1/L5/125:126, 1/L5/142:144 | No text annotation | ||
| IL_9PKG_013 | 1/L5/195:196, 1/L5/244:246 | No text annotation | ||
| IL_9PKG_014 | 1/L5/199:201, 1/L5/214:215 | No text annotation | ||
| IL_9PKG_015 | 1/L5/339:342, 1/L8/32:33 | No text annotation | ||
| IL_9PKG_016 | 1/L5/348:350, 1/L8/25:26 | No text annotation | ||
| IL_9PKG_017 | 1/L5/387:390, 1/L5/401:414 | No text annotation | ||
| IL_9PKG_018 | 1/L5/415:421, 1/L8/13:19 | No text annotation | ||
| IL_9PKG_019 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9PKG_020 | 1/L5/448:450, 1/L5/1297:1298 | No text annotation | ||
| IL_9PKG_021 | 1/L5/459:460, 1/L5/695:697 | No text annotation | ||
| IL_9PKG_023 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_9PKG_030 | 1/L5/508:510, 1/L5/649:650 | No text annotation | ||
| IL_9PKG_032 | 1/L5/709:710, 1/L5/1286:1288 | No text annotation | ||
| IL_9PKG_033 | 1/L5/723:724, 1/L5/942:945 | No text annotation | ||
| IL_9PKG_034 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_9PKG_035 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_9PKG_038 | 1/L5/745:752, 1/L5/911:919 | No text annotation | ||
| IL_9PKG_039 | 1/L5/1073:1074, 1/L5/1237:1239 | No text annotation | ||
| IL_9PKG_042 | 1/L5/1082:1084, 1/L5/1213:1217 | No text annotation | ||
| IL_9PKG_043 | 1/L5/1086:1087, 1/L5/1209:1211 | No text annotation | ||
| IL_9PKG_046 | 1/L5/1244:1245, 1/L5/1265:1267 | No text annotation | ||
| IL_9PKG_047 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9PKG_048 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_9PKG_049 | 1/L5/1360:1361, 1/L5/1376:1379 | No text annotation | ||
| IL_9PKG_050 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | ||
| IL_9PKG_051 | 1/L5/1431:1434, 1/L5/1450:1453 | No text annotation | ||
| IL_9PKG_052 | 1/L5/1467:1468, 1/L5/1496:1498 | No text annotation | ||
| IL_9PKG_053 | 1/L5/1474:1476, 1/L5/1489:1490 | No text annotation | ||
| IL_9PKG_054 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation | ||
| IL_9PKG_055 | 1/L5/1520:1522, 1/L5/1655:1657 | No text annotation | ||
| IL_9PKG_056 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | ||
| IL_9PKG_057 | 1/L5/1545:1546, 1/L5/1612:1614 | No text annotation | ||
| IL_9PKG_058 | 1/L5/1550:1551, 1/L5/1576:1578 | No text annotation | ||
| IL_9PKG_059 | 1/L5/1551:1555, 1/L5/1572:1576 | No text annotation | ||
| IL_9PKG_060 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | ||
| IL_9PKG_061 | 1/L5/1590:1592, 1/L5/1603:1604 | No text annotation | ||
| IL_9PKG_062 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | ||
| IL_9PKG_063 | 1/L5/1671:1673, 1/L5/1682:1684 | No text annotation | ||
| IL_9PKG_064 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_9PKG_065 | 1/L5/1694:1721, 1/L5/1841:1842 | No text annotation | ||
| IL_9PKG_066 | 1/L5/1723:1725, 1/L5/1838:1839 | No text annotation | ||
| IL_9PKG_067 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_9PKG_068 | 1/L5/1737:1738, 1/L5/1790:1792 | No text annotation | ||
| IL_9PKG_069 | 1/L5/1739:1744, 1/L5/1786:1789 | No text annotation | ||
| IL_9PKG_070 | 1/L5/1746:1749, 1/L5/1781:1784 | No text annotation | ||
| IL_9PKG_071 | 1/L5/1749:1751, 1/L5/1779:1781 | No text annotation | ||
| IL_9PKG_073 | 1/L5/1814:1816, 1/L5/1823:1824 | No text annotation | ||
| IL_9PKG_074 | 1/L5/1858:1860, 1/L5/1874:1876 | No text annotation | ||
| IL_9PKG_076 | 1/L5/1905:1909, 1/L5/2067:2071 | No text annotation | ||
| IL_9PKG_077 | 1/L5/1911:1918, 1/L5/2064:2065 | No text annotation | ||
| IL_9PKG_078 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation | ||
| IL_9PKG_079 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_9PKG_080 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | ||
| IL_9PKG_081 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | ||
| IL_9PKG_082 | 1/L5/1946:1948, 1/L5/2035:2036 | No text annotation | ||
| IL_9PKG_083 | 1/L5/1957:1965, 1/L5/2022:2026 | No text annotation | ||
| IL_9PKG_086 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation | ||
| IL_9PKG_087 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | ||
| IL_9PKG_088 | 1/L5/2299:2301, 1/L5/2334:2335 | No text annotation | ||
| IL_9PKG_089 | 1/L5/2302:2309, 1/L5/2329:2333 | No text annotation | ||
| IL_9PKG_090 | 1/L5/2312:2314, 1/L5/2325:2326 | No text annotation | ||
| IL_9PKG_091 | 1/L5/2358:2364, 1/L5/3858:3863 | No text annotation | ||
| IL_9PKG_092 | 1/L5/2415:2419, 1/L5/2427:2429 | No text annotation | ||
| IL_9PKG_093 | 1/L5/2446:2450, 1/L5/2509:2514 | No text annotation | ||
| IL_9PKG_096 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | ||
| IL_9PKG_097 | 1/L5/2549:2550, 1/L5/2768:2770 | No text annotation | ||
| IL_9PKG_098 | 1/L5/2589:2593, 1/L5/2752:2756 | No text annotation | ||
| IL_9PKG_099 | 1/L5/2613:2614, 1/L5/2724:2726 | No text annotation | ||
| IL_9PKG_100 | 1/L5/2614:2615, 1/L5/2722:2724 | No text annotation | ||
| IL_9PKG_101 | 1/L5/2646:2648, 1/L5/2685:2688 | No text annotation | ||
| IL_9PKG_102 | 1/L5/2651:2653, 1/L5/2681:2682 | No text annotation | ||
| IL_9PKG_103 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | ||
| IL_9PKG_105 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | ||
| IL_9PKG_106 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | ||
| IL_9PKG_107 | 1/L5/2847:2850, 1/L5/3840:3841 | No text annotation | ||
| IL_9PKG_108 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | ||
| IL_9PKG_109 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | ||
| IL_9PKG_110 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | ||
| IL_9PKG_111 | 1/L5/2889:2891, 1/L5/3610:3612 | No text annotation | ||
| IL_9PKG_112 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | ||
| IL_9PKG_113 | 1/L5/2901:2905, 1/L5/3589:3598 | No text annotation | ||
| IL_9PKG_115 | 1/L5/3632:3633, 1/L5/3827:3829 | No text annotation | ||
| IL_9PKG_116 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | ||
| IL_9PKG_117 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | ||
| IL_9PKG_118 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | ||
| IL_9PKG_119 | 1/L5/3708:3710, 1/L5/3741:3742 | No text annotation | ||
| IL_9PKG_120 | 1/L5/3708:3713, 1/L5/3740:3742 | No text annotation | ||
| IL_9PKG_121 | 1/L5/3710:3713, 1/L5/3740:3741 | No text annotation | ||
| IL_9PKG_122 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | ||
| IL_9PKG_123 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | ||
| IL_9PKG_124 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | ||
| IL_9PKG_125 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | ||
| IL_9PKG_126 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | ||
| IL_9PKG_127 | 1/L5/3913:3915, 1/L5/4388:4389 | No text annotation | ||
| IL_9PKG_128 | 1/L5/3916:3917, 1/L5/4384:4387 | No text annotation | ||
| IL_9PKG_129 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | ||
| IL_9PKG_130 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | ||
| IL_9PKG_131 | 1/L5/4191:4192, 1/L5/4202:4204 | No text annotation | ||
| IL_9PKG_132 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | ||
| IL_9PKG_133 | 1/L5/4291:4293, 1/L5/4317:4318 | No text annotation | ||
| IL_9PKG_134 | 1/L5/4295:4298, 1/L5/4312:4315 | No text annotation | ||
| IL_9PKG_135 | 1/L5/4347:4350, 1/L5/4364:4365 | No text annotation | ||
| IL_9PKG_136 | 1/L5/4400:4403, 1/L5/4440:4444 | No text annotation | ||
| IL_9PKG_137 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | ||
| IL_9PKG_138 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | ||
| IL_9PKG_139 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | ||
| IL_9PKG_140 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | ||
| IL_9PKG_141 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | ||
| IL_9PKG_142 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | ||
| IL_9PKG_143 | 1/L5/4466:4468, 1/L5/4489:4491 | No text annotation | ||
| IL_9PKG_144 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_9PKG_145 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_9PKG_146 | 1/L5/4495:4497, 1/L5/4503:4505 | No text annotation | ||
| IL_9PKG_147 | 1/L5/4537:4538, 1/L5/4547:4549 | No text annotation | ||
| IL_9PKG_148 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | ||
| IL_9PKG_149 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation | ||
| IL_9PKG_150 | 1/L5/4590:4592, 1/L5/4618:4620 | No text annotation | ||
| IL_9PKG_151 | 1/L5/4596:4603, 1/L5/4608:4614 | No text annotation | ||
| IL_9PKG_152 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_9PKG_153 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | ||
| IL_9PKG_154 | 1/L5/4638:4640, 1/L5/4659:4661 | No text annotation | ||
| IL_9PKG_155 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | ||
| IL_9PKG_156 | 1/L5/4680:4685, 1/L5/4705:4710 | No text annotation | ||
| IL_9PKG_157 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation | ||
| IL_9PKG_158 | 1/L5/4743:4746, 1/L5/4954:4957 | No text annotation | ||
| IL_9PKG_159 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_9PKG_160 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_9PKG_161 | 1/L5/4769:4771, 1/L5/4863:4865 | No text annotation | ||
| IL_9PKG_162 | 1/L5/4885:4889, 1/L5/4930:4934 | No text annotation | ||
| IL_9PKG_163 | 1/L5/4891:4897, 1/L5/4923:4928 | No text annotation | ||
| IL_9PKG_165 | 1/L5/4972:4975, 1/L5/4983:4986 | No text annotation | ||
| IL_9PKG_166 | 1/L5/4992:4994, 1/L5/5057:5059 | No text annotation | ||
| IL_9PKG_167 | 1/L5/4996:4997, 1/L5/5053:5055 | No text annotation | ||
| IL_9PKG_168 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | ||
| IL_9PKG_169 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_9PKG_170 | 1/L5/5012:5014, 1/L5/5035:5036 | No text annotation | ||
| IL_9PKG_171 | 1/L5/5014:5017, 1/L5/5032:5035 | No text annotation | ||
| IL_9PKG_172 | 1/L7/15:16, 1/L7/62:64 | No text annotation | geometric IL_8QYX_165 IL_05642.3 | |
| IL_9PKG_173 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.1 | |
| IL_9PKG_174 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_9PKG_175 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9PKG_176 | 1/L7/71:78, 1/L7/98:104 | No text annotation | geometric IL_8QYX_169 IL_62167.3 | |
| IL_9PKG_177 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.3 | |
| IL_9PKG_178 | 1/L7/82:85, 1/L7/92:94 | No text annotation | geometric IL_8QYX_171 IL_01003.4 | |
| IL_9PKG_179 | 1/L8/64:66, 1/L8/92:95 | No text annotation | ||
| IL_9PKG_181 | 1/S2/23:25, 1/S2/649:651 | No text annotation | ||
| IL_9PKG_184 | 1/S2/41:47, 1/S2/479:481 | No text annotation | ||
| IL_9PKG_187 | 1/S2/63:68, 1/S2/81:85 | No text annotation | ||
| IL_9PKG_188 | 1/S2/108:110, 1/S2/351:353 | No text annotation | ||
| IL_9PKG_189 | 1/S2/110:112, 1/S2/349:351 | No text annotation | ||
| IL_9PKG_190 | 1/S2/112:115, 1/S2/348:349 | No text annotation | ||
| IL_9PKG_194 | 1/S2/145:151, 1/S2/167:174 | No text annotation | ||
| IL_9PKG_195 | 1/S2/152:154, 1/S2/164:166 | No text annotation | ||
| IL_9PKG_198 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_9PKG_201 | 1/S2/359:364, 1/S2/396:403 | No text annotation | ||
| IL_9PKG_202 | 1/S2/366:371, 1/S2/393:394 | No text annotation | ||
| IL_9PKG_203 | 1/S2/411:413, 1/S2/424:429 | No text annotation | ||
| IL_9PKG_204 | 1/S2/437:439, 1/S2/454:456 | No text annotation | ||
| IL_9PKG_205 | 1/S2/459:461, 1/S2/468:470 | No text annotation | ||
| IL_9PKG_206 | 1/S2/487:489, 1/S2/511:512 | No text annotation | ||
| IL_9PKG_207 | 1/S2/491:495, 1/S2/508:509 | No text annotation | ||
| IL_9PKG_208 | 1/S2/495:496, 1/S2/506:508 | No text annotation | ||
| IL_9PKG_212 | 1/S2/563:565, 1/S2/585:592 | No text annotation | ||
| IL_9PKG_214 | 1/S2/599:606, 1/S2/636:637 | No text annotation | ||
| IL_9PKG_216 | 1/S2/611:617, 1/S2/624:632 | No text annotation | ||
| IL_9PKG_217 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation | ||
| IL_9PKG_218 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | ||
| IL_9PKG_219 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation | ||
| IL_9PKG_220 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | ||
| IL_9PKG_221 | 1/S2/802:803, 1/S2/860:863 | No text annotation | ||
| IL_9PKG_222 | 1/S2/805:807, 1/S2/856:858 | No text annotation | ||
| IL_9PKG_223 | 1/S2/807:815, 1/S2/849:856 | No text annotation | ||
| IL_9PKG_224 | 1/S2/874:876, 1/S2/910:912 | No text annotation | ||
| IL_9PKG_226 | 1/S2/922:923, 1/S2/1019:1022 | No text annotation | ||
| IL_9PKG_227 | 1/S2/925:926, 1/S2/1015:1017 | No text annotation | ||
| IL_9PKG_228 | 1/S2/928:931, 1/S2/1010:1013 | No text annotation | ||
| IL_9PKG_229 | 1/S2/931:935, 1/S2/1007:1010 | No text annotation | ||
| IL_9PKG_230 | 1/S2/942:945, 1/S2/981:984 | No text annotation | ||
| IL_9PKG_231 | 1/S2/952:956, 1/S2/967:974 | No text annotation | ||
| IL_9PKG_232 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | ||
| IL_9PKG_233 | 1/S2/1047:1051, 1/S2/1067:1071 | No text annotation | ||
| IL_9PKG_234 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | ||
| IL_9PKG_235 | 1/S2/1098:1101, 1/S2/1131:1134 | No text annotation | ||
| IL_9PKG_236 | 1/S2/1101:1103, 1/S2/1129:1131 | No text annotation | ||
| IL_9PKG_238 | 1/S2/1168:1175, 1/S2/1186:1191 | No text annotation | ||
| IL_9PKG_239 | 1/S2/1203:1204, 1/S2/1694:1696 | No text annotation | ||
| IL_9PKG_240 | 1/S2/1206:1208, 1/S2/1691:1692 | No text annotation | ||
| IL_9PKG_241 | 1/S2/1214:1217, 1/S2/1681:1685 | No text annotation | ||
| IL_9PKG_242 | 1/S2/1230:1232, 1/S2/1526:1528 | No text annotation | ||
| IL_9PKG_243 | 1/S2/1235:1236, 1/S2/1521:1523 | No text annotation | ||
| IL_9PKG_249 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | ||
| IL_9PKG_250 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | ||
| IL_9PKG_251 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | ||
| IL_9PKG_252 | 1/S2/1337:1338, 1/S2/1488:1490 | No text annotation | ||
| IL_9PKG_253 | 1/S2/1347:1349, 1/S2/1380:1382 | No text annotation | ||
| IL_9PKG_254 | 1/S2/1363:1365, 1/S2/1374:1375 | No text annotation | ||
| IL_9PKG_256 | 1/S2/1402:1405, 1/S2/1441:1444 | No text annotation | ||
| IL_9PKG_264 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | ||
| IL_9PKG_265 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | ||
| IL_9PKG_266 | 1/S2/1706:1708, 1/S2/1826:1828 | No text annotation | ||
| IL_9PKG_267 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | ||
| IL_9PKG_268 | 1/S2/1714:1716, 1/S2/1817:1819 | No text annotation | ||
| IL_9PKG_269 | 1/S2/1717:1720, 1/S2/1813:1816 | No text annotation | ||
| IL_9PKG_270 | 1/S2/1720:1722, 1/S2/1812:1813 | No text annotation | ||
| IL_9PKG_271 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation | ||
| IL_9PKG_272 | 1/S2/1733:1736, 1/S2/1798:1801 | No text annotation | ||
| IL_9PKG_273 | 1/S2/1739:1741, 1/S2/1793:1795 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9PKG_009 | No text annotation | ||
| IL_9PKG_010 | No text annotation | ||
| IL_9PKG_011 | No text annotation | ||
| IL_9PKG_012 | No text annotation | ||
| IL_9PKG_022 | No text annotation | ||
| IL_9PKG_024 | No text annotation | ||
| IL_9PKG_025 | No text annotation | ||
| IL_9PKG_026 | No text annotation | ||
| IL_9PKG_027 | No text annotation | ||
| IL_9PKG_028 | No text annotation | ||
| IL_9PKG_029 | No text annotation | ||
| IL_9PKG_031 | No text annotation | ||
| IL_9PKG_036 | No text annotation | ||
| IL_9PKG_037 | No text annotation | ||
| IL_9PKG_040 | No text annotation | ||
| IL_9PKG_041 | No text annotation | ||
| IL_9PKG_044 | No text annotation | ||
| IL_9PKG_045 | No text annotation | ||
| IL_9PKG_072 | No text annotation | ||
| IL_9PKG_075 | No text annotation | ||
| IL_9PKG_084 | No text annotation | ||
| IL_9PKG_085 | No text annotation | ||
| IL_9PKG_094 | No text annotation | ||
| IL_9PKG_095 | No text annotation | ||
| IL_9PKG_104 | No text annotation | ||
| IL_9PKG_114 | No text annotation | ||
| IL_9PKG_164 | No text annotation | ||
| IL_9PKG_180 | No text annotation | ||
| IL_9PKG_182 | No text annotation | ||
| IL_9PKG_183 | No text annotation | ||
| IL_9PKG_185 | No text annotation | ||
| IL_9PKG_186 | No text annotation | ||
| IL_9PKG_191 | No text annotation | ||
| IL_9PKG_192 | No text annotation | ||
| IL_9PKG_193 | No text annotation | ||
| IL_9PKG_196 | No text annotation | ||
| IL_9PKG_197 | No text annotation | ||
| IL_9PKG_199 | No text annotation | ||
| IL_9PKG_200 | No text annotation | ||
| IL_9PKG_209 | No text annotation | ||
| IL_9PKG_210 | No text annotation | ||
| IL_9PKG_211 | No text annotation | ||
| IL_9PKG_213 | No text annotation | ||
| IL_9PKG_215 | No text annotation | ||
| IL_9PKG_225 | No text annotation | ||
| IL_9PKG_237 | No text annotation | ||
| IL_9PKG_244 | No text annotation | ||
| IL_9PKG_245 | No text annotation | ||
| IL_9PKG_246 | No text annotation | ||
| IL_9PKG_247 | No text annotation | ||
| IL_9PKG_248 | No text annotation | ||
| IL_9PKG_255 | No text annotation | ||
| IL_9PKG_257 | No text annotation | ||
| IL_9PKG_258 | No text annotation | ||
| IL_9PKG_259 | No text annotation | ||
| IL_9PKG_260 | No text annotation | ||
| IL_9PKG_261 | No text annotation | ||
| IL_9PKG_262 | No text annotation | ||
| IL_9PKG_263 | No text annotation | ||
| IL_9PKG_274 | No text annotation | ||
| IL_9PKG_275 | No text annotation | ||
| IL_9PKG_276 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9PKG_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_9PKG_002 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | ||
| J3_9PKG_003 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | ||
| J3_9PKG_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | ||
| J3_9PKG_005 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_9PKG_006 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9PKG_007 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | ||
| J3_9PKG_008 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | ||
| J3_9PKG_009 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | ||
| J3_9PKG_011 | 1/L5/2087:2110, 1/L5/2252:2257, 1/L5/2261:2270 | No text annotation | ||
| J3_9PKG_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | ||
| J3_9PKG_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | ||
| J3_9PKG_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | ||
| J3_9PKG_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_9PKG_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_9PKG_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | ||
| J3_9PKG_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | ||
| J3_9PKG_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | ||
| J3_9PKG_020 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_9PKG_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | ||
| J3_9PKG_022 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | ||
| J3_9PKG_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | ||
| J3_9PKG_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_9PKG_025 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9PKG_026 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_9PKG_027 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | ||
| J3_9PKG_028 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | ||
| J3_9PKG_029 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | ||
| J3_9PKG_030 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_9PKG_031 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_9PKG_032 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | ||
| J3_9PKG_033 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | ||
| J3_9PKG_034 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_9PKG_035 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | ||
| J3_9PKG_038 | 1/S2/1270:1277, 1/S2/1320:1324, 1/S2/1504:1512 | No text annotation | ||
| J3_9PKG_039 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | ||
| J3_9PKG_040 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | ||
| J3_9PKG_041 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9PKG_042 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | ||
| J4_9PKG_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | ||
| J4_9PKG_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9PKG_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9PKG_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_9PKG_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | ||
| J4_9PKG_006 | 1/L5/2451:2456, 1/L5/2465:2469, 1/L5/2471:2476, 1/L5/2501:2508 | No text annotation | ||
| J4_9PKG_007 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_9PKG_008 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | ||
| J4_9PKG_009 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | ||
| J4_9PKG_010 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_9PKG_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_9PKG_012 | 1/Pt/7:10, 1/Pt/25:27, 1/Pt/43:49, 1/Pt/65:66 | tRNA junction | homologous J4_3WQY_001 J4_95067.1 | |
| J4_9PKG_013 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | ||
| J4_9PKG_014 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | ||
| J4_9PKG_015 | 1/S2/685:746, 1/S2/796:800, 1/S2/865:874, 1/S2/912:917 | No text annotation | ||
| J5_9PKG_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | ||
| J5_9PKG_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | ||
| J5_9PKG_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | ||
| J5_9PKG_004 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_9PKG_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | ||
| J5_9PKG_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | ||
| J5_9PKG_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_9PKG_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | ||
| J5_9PKG_009 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J6_9PKG_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9PKG_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_9PKG_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9PKG_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9PKG_010 | No text annotation | ||
| J3_9PKG_036 | No text annotation | ||
| J3_9PKG_037 | No text annotation |
Coloring options: