HL_9PKG_014

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCCC

Length

24 nucleotides

Bulged bases

9PKG|1|L5|G|1178, 9PKG|1|L5|U|1179, 9PKG|1|L5|C|1181, 9PKG|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|1169
9PKG|1|L5|G|1170
9PKG|1|L5|G|1171
9PKG|1|L5|C|1172
9PKG|1|L5|G|1173
9PKG|1|L5|G|1174
9PKG|1|L5|A|1175
9PKG|1|L5|C|1176
9PKG|1|L5|U|1177
9PKG|1|L5|G|1178
9PKG|1|L5|U|1179
9PKG|1|L5|C|1180
9PKG|1|L5|C|1181
9PKG|1|L5|C|1182
9PKG|1|L5|C|1183
9PKG|1|L5|A|1184
9PKG|1|L5|G|1185
9PKG|1|L5|U|1186
9PKG|1|L5|G|1187
9PKG|1|L5|C|1188
9PKG|1|L5|G|1189
9PKG|1|L5|C|1190
9PKG|1|L5|C|1191
9PKG|1|L5|C|1192

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like