HL_9PKG_026

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

9PKG|1|L5|U|1757, 9PKG|1|L5|C|1763, 9PKG|1|L5|A|1765, 9PKG|1|L5|A|1766, 9PKG|1|L5|A|1767, 9PKG|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|U|1756
9PKG|1|L5|U|1757
9PKG|1|L5|G|1758
9PKG|1|L5|G|1759
9PKG|1|L5|G|1760
9PKG|1|L5|G|1761
9PKG|1|L5|C|1762
9PKG|1|L5|C|1763
9PKG|1|L5|G|1764
9PKG|1|L5|A|1765
9PKG|1|L5|A|1766
9PKG|1|L5|A|1767
9PKG|1|L5|C|1768
9PKG|1|L5|G|1769
9PKG|1|L5|A|1770
9PKG|1|L5|U|1771
9PKG|1|L5|C|1772
9PKG|1|L5|U|1773
9PKG|1|L5|C|1774
9PKG|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18