HL_9PKG_043

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9PKG|1|L5|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|2624
9PKG|1|L5|U|2625
9PKG|1|L5|U|2626
9PKG|1|L5|C|2627
9PKG|1|L5|U|2628
9PKG|1|L5|C|2629
9PKG|1|L5|U|2630
9PKG|1|L5|U|2631
9PKG|1|L5|PSU|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CI

Transcription factor BTF3

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15