HL_9PKG_059

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GACAUGAGAACUCUGAUCGUU

Length

21 nucleotides

Bulged bases

9PKG|1|L5|A|3947, 9PKG|1|L5|A|3954, 9PKG|1|L5|A|4056, 9PKG|1|L5|C|4057, 9PKG|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|3946
9PKG|1|L5|A|3947
9PKG|1|L5|C|3948
9PKG|1|L5|A|3949
9PKG|1|L5|U|3950
9PKG|1|L5|G|3951
9PKG|1|L5|A|3952
9PKG|1|L5|G|3953
9PKG|1|L5|A|3954
9PKG|1|L5|A|4056
9PKG|1|L5|C|4057
9PKG|1|L5|U|4058
9PKG|1|L5|C|4059
9PKG|1|L5|U|4060
9PKG|1|L5|G|4061
9PKG|1|L5|A|4062
9PKG|1|L5|U|4063
9PKG|1|L5|C|4064
9PKG|1|L5|G|4065
9PKG|1|L5|U|4066
9PKG|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a