HL_9PKG_089

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PKG_089 not in the Motif Atlas

Homologous match to HL_7EQJ_006

Geometric discrepancy: 0.1056

The information below is about HL_7EQJ_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9PKG|1|Pt|G|53
9PKG|1|Pt|U|54
9PKG|1|Pt|U|55
9PKG|1|Pt|C|56
9PKG|1|Pt|G|57
9PKG|1|Pt|A|58
9PKG|1|Pt|A|59
9PKG|1|Pt|A|60
9PKG|1|Pt|C|61

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a