HL_9PN5_021

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9PN5|1|A1|A|913, 9PN5|1|A1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9PN5|1|A1|G|910
9PN5|1|A1|C|911
9PN5|1|A1|G|912
9PN5|1|A1|A|913
9PN5|1|A1|A|914
9PN5|1|A1|A|915
9PN5|1|A1|G|916
9PN5|1|A1|A|917
9PN5|1|A1|C|918

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AN

Large ribosomal subunit protein eL15A

Chain Aj

60S ribosomal protein L37-A