HL_9PN5_040

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9PN5|1|A1|C|1846, 9PN5|1|A1|G|1848, 9PN5|1|A1|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9PN5|1|A1|C|1844
9PN5|1|A1|G|1845
9PN5|1|A1|C|1846
9PN5|1|A1|A|1847
9PN5|1|A1|G|1848
9PN5|1|A1|C|1849
9PN5|1|A1|A|1850
9PN5|1|A1|G|1851

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A

Chain Al

60S ribosomal protein L39