HL_9PN5_047

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUAAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9PN5|1|A1|A|2256

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.3

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|A1|G|2253
9PN5|1|A1|U|2254
9PN5|1|A1|A|2255
9PN5|1|A1|A|2256
9PN5|1|A1|C|2257
9PN5|1|A1|PSU|2258
9PN5|1|A1|A|2259
9PN5|1|A1|PSU|2260
9PN5|1|A1|G|2261
9PN5|1|A1|A|2262
9PN5|1|A1|C|2263

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain Be

Small ribosomal subunit protein eS30A