HL_9PN5_050

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

9PN5|1|A1|U|2537, 9PN5|1|A1|C|2539, 9PN5|1|A1|A|2540, 9PN5|1|A1|U|2541, 9PN5|1|A1|U|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9PN5|1|A1|A|2535
9PN5|1|A1|A|2536
9PN5|1|A1|U|2537
9PN5|1|A1|U|2538
9PN5|1|A1|C|2539
9PN5|1|A1|A|2540
9PN5|1|A1|U|2541
9PN5|1|A1|U|2542
9PN5|1|A1|U|2543
9PN5|1|A1|U|2544

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

Large ribosomal subunit protein eL8A

Chain Ag

60S ribosomal protein L34-A

Chain BB

Small ribosomal subunit protein eS1A