HL_9PN5_067

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9PN5|1|A1|A|3243, 9PN5|1|A1|A|3244, 9PN5|1|A1|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9PN5|1|A1|C|3240
9PN5|1|A1|G|3241
9PN5|1|A1|G|3242
9PN5|1|A1|A|3243
9PN5|1|A1|A|3244
9PN5|1|A1|A|3245
9PN5|1|A1|G|3246
9PN5|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AO

Large ribosomal subunit protein uL13A