Motif HL_31089.4 Version HL_31089.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DXL_002 | 9DXL | 0.5084 | 2 | A | RhoBAST aptamer | U | 14 | G | 15 | A | 16 | G | 18 | A | 20 | cWW |
| 2 | HL_8JY0_002 | 8JY0 | 0.7379 | 2 | B | RhoBAST | U | 30 | G | 31 | A | 32 | G | 34 | A | 36 | cWW |
| 3 | HL_9AXU_065 | 9AXU | 0.2454 | 3 | 2 | LSU rRNA | C | 3340 | G | 3341 | G | 3342 | G | 3345 | G | 3347 | cWW |
| 4 | HL_8OI5_065 | 8OI5 | 0.1121 | 3 | 1 | LSU rRNA | C | 3205 | G | 3206 | G | 3207 | A | 3210 | G | 3212 | cWW |
| 5 | HL_9SUM_062 | 9SUM | 0.0000 | 3 | A | LSU rRNA | C | 3132 | G | 3133 | G | 3134 | A | 3137 | G | 3139 | cWW |
| 6 | HL_8GLP_074 | 8GLP | 0.0788 | 3 | L5 | LSU rRNA | G | 4907 | G | 4908 | A | 4909 | G | 4912 | C | 4914 | cWW |
| 7 | HL_9H3G_070 | 9H3G | 0.0870 | 3 | A | LSU rRNA | C | 3228 | G | 3229 | G | 3230 | G | 3233 | G | 3235 | cWW |
| 8 | HL_9PN5_067 | 9PN5 | 0.1170 | 3 | A1 | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3245 | G | 3247 | cWW |
| 9 | HL_5B2P_003 | 5B2P | 0.5918 | 0 | B | Guide RNA | A | 64 | U | 65 | U | 66 | U | 67 | U | 68 | cWW |
| 10 | HL_2QUX_002 | 2QUX | 0.5776 | 3 | F | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 3 |
| UGAAGGA | 2 |
| CGGAAGUG | 1 |
| GGAGAGGC | 1 |
| CGGAAGCG | 1 |
| AUUUU | 1 |
| GAUAUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 3 |
| GAAGG | 2 |
| GGAAGU | 1 |
| GAGAGG | 1 |
| GGAAGC | 1 |
| UUU | 1 |
| AUAUGG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.44 | Max 0.88
Coloring options: