HL_9PN5_075

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

9PN5|1|A4|A|111, 9PN5|1|A4|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9PN5|1|A4|C|108
9PN5|1|A4|A|109
9PN5|1|A4|C|110
9PN5|1|A4|A|111
9PN5|1|A4|U|112
9PN5|1|A4|U|113
9PN5|1|A4|G|114

Current chains

Chain A4

5.8S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L25

Chain Aj

60S ribosomal protein L37-A

Chain Al

60S ribosomal protein L39