HL_9PN5_097

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9PN5|1|B5|U|1004

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9PN5|1|B5|G|997
9PN5|1|B5|A|998
9PN5|1|B5|PSU|999
9PN5|1|B5|C|1000
9PN5|1|B5|A|1001
9PN5|1|B5|G|1002
9PN5|1|B5|A|1003
9PN5|1|B5|U|1004
9PN5|1|B5|A|1005
9PN5|1|B5|C|1006
9PN5|1|B5|C|1007

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BO

Small ribosomal subunit protein uS11A

Chain Ba

Small ribosomal subunit protein eS26B