HL_9PN5_101

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

9PN5|1|B5|A|1196

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|G|1188
9PN5|1|B5|A|1189
9PN5|1|B5|C|1190
9PN5|1|B5|B8N|1191
9PN5|1|B5|C|1192
9PN5|1|B5|A|1193
9PN5|1|B5|A|1194
9PN5|1|B5|C|1195
9PN5|1|B5|A|1196
9PN5|1|B5|C|1197

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS9A

Chain BU

Small ribosomal subunit protein uS10

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

Ubiquitin-ribosomal protein eS31 fusion protein