HL_9PN5_105

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

9PN5|1|B5|U|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|C|1359
9PN5|1|B5|A|1360
9PN5|1|B5|U|1361
9PN5|1|B5|U|1362
9PN5|1|B5|U|1363
9PN5|1|B5|G|1364

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Small ribosomal subunit protein uS7

Chain BQ

Small ribosomal subunit protein uS9A

Chain BT

Small ribosomal subunit protein eS19A