HL_9PN5_109

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

9PN5|1|B5|C|1596, 9PN5|1|B5|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|G|1594
9PN5|1|B5|U|1595
9PN5|1|B5|C|1596
9PN5|1|B5|A|1597
9PN5|1|B5|U|1598
9PN5|1|B5|C|1599
9PN5|1|B5|A|1600
9PN5|1|B5|G|1601
9PN5|1|B5|C|1602

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS9A

Chain BT

Small ribosomal subunit protein eS19A

Chain BU

Small ribosomal subunit protein uS10

Chain Bd

Small ribosomal subunit protein uS14A