Motif HL_25307.3 Version HL_25307.3 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_116 | 8GLP | 0.1487 | 2 | S2 | SSU rRNA | G | 1658 | U | 1659 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | cWW | tWH | |
| 2 | HL_9H3G_107 | 9H3G | 0.0590 | 2 | h1 | SSU rRNA | G | 1596 | U | 1597 | A | 1599 | U | 1600 | C | 1601 | A | 1602 | C | 1604 | cWW | tWH | |
| 3 | HL_9PN5_109 | 9PN5 | 0.0000 | 2 | B5 | SSU rRNA | G | 1594 | U | 1595 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | tWH | |
| 4 | HL_9SUM_099 | 9SUM | 0.0735 | 2 | CA | SSU rRNA | G | 1569 | U | 1570 | A | 1572 | C | 1573 | C | 1574 | A | 1575 | C | 1577 | cWW | tWH | |
| 5 | HL_8CRE_224 | 8CRE | 0.0907 | 2 | T-loop with 1 bulged base | CM | SSU rRNA | G | 1581 | U | 1582 | A | 1584 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAUCAGC | 3 |
| GUCAUAAGC | 1 |
| GUCACCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCAG | 3 |
| UCAUAAG | 1 |
| UCACCAA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- T-loop with 1 bulged base (1)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.17
Coloring options: