3D structure

PDB id
9PR4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GCAGAACCCAACC
Length
13 nucleotides
Bulged bases
9PR4|1|A|G|2831, 9PR4|1|A|A|2832, 9PR4|1|A|C|2839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9PR4|1|A|G|2828
9PR4|1|A|C|2829
9PR4|1|A|A|2830
9PR4|1|A|G|2831
9PR4|1|A|A|2832
9PR4|1|A|A|2833
9PR4|1|A|C|2834
9PR4|1|A|C|2835
9PR4|1|A|C|2836
9PR4|1|A|A|2837
9PR4|1|A|A|2838
9PR4|1|A|C|2839
9PR4|1|A|C|2840

Current chains

Chain A
16S mitochondrial rRNA

Nearby chains

Chain 6
39S ribosomal protein L38, mitochondrial
Chain N
39S ribosomal protein L16, mitochondrial
Chain W
39S ribosomal protein L27, mitochondrial
Chain Z
39S ribosomal protein L30, mitochondrial
Chain f
39S ribosomal protein L48, mitochondrial

Coloring options:

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