9PR4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9PR4_001 | 1/A/1722:1729 | No text annotation | geometric HL_9E6Q_006 HL_48677.1 | |
| HL_9PR4_002 | 1/A/1746:1752 | No text annotation | geometric HL_9E6Q_008 HL_76371.2 | |
| HL_9PR4_003 | 1/A/1786:1791 | GNRA | homologous HL_7A0S_015 HL_34789.4 | |
| HL_9PR4_004 | 1/A/1831:1839 | No text annotation | ||
| HL_9PR4_005 | 1/A/1847:1856 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.3 | |
| HL_9PR4_006 | 1/A/1884:1889 | No text annotation | ||
| HL_9PR4_007 | 1/A/1934:1940 | No text annotation | ||
| HL_9PR4_008 | 1/A/1954:1963 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_9PR4_009 | 1/A/1988:1996 | No text annotation | geometric HL_9E6Q_025 HL_92598.1 | |
| HL_9PR4_010 | 1/A/2035:2040 | No text annotation | homologous HL_7A0S_024 HL_27530.1 | |
| HL_9PR4_011 | 1/A/2064:2075 | No text annotation | ||
| HL_9PR4_012 | 1/A/2107:2114 | GNRA | homologous HL_7A0S_026 HL_34789.4 | |
| HL_9PR4_013 | 1/A/2129:2136 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_9PR4_014 | 1/A/2175:2185 | No text annotation | homologous HL_1MMS_003 HL_20174.1 | |
| HL_9PR4_015 | 1/A/2202:2209 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.3 | |
| HL_9PR4_016 | 1/A/2279:2286 | No text annotation | geometric HL_5E6M_002 HL_10874.1 | |
| HL_9PR4_017 | 1/A/2319:2324 | UNCG variation | geometric HL_6DME_002 HL_61337.4 | |
| HL_9PR4_018 | 1/A/2352:2361 | No text annotation | ||
| HL_9PR4_019 | 1/A/2400:2403 | Mini UNCG | geometric HL_9DFE_037 HL_90436.3 | |
| HL_9PR4_020 | 1/A/2428:2435 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_9PR4_021 | 1/A/2497:2507 | No text annotation | geometric HL_9E6Q_045 HL_87681.1 | |
| HL_9PR4_022 | 1/A/2518:2532 | No text annotation | ||
| HL_9PR4_023 | 1/A/2555:2560 | No text annotation | ||
| HL_9PR4_025 | 1/A/2612:2620 | No text annotation | homologous HL_7A0S_048 HL_61418.2 | |
| HL_9PR4_026 | 1/A/2690:2699 | No text annotation | homologous HL_7A0S_049 HL_78372.1 | |
| HL_9PR4_028 | 1/A/2812:2820 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_9PR4_029 | 1/A/2828:2840 | No text annotation | ||
| HL_9PR4_030 | 1/A/2862:2870 | No text annotation | ||
| HL_9PR4_031 | 1/A/2902:2907 | No text annotation | geometric HL_8GLP_107 HL_34789.4 | |
| HL_9PR4_032 | 1/A/2958:2966 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_9PR4_033 | 1/A/3015:3022 | GNRA variation | homologous HL_7A0S_060 HL_46665.2 | |
| HL_9PR4_034 | 1/A/3038:3044 | No text annotation | homologous HL_7A0S_061 HL_48677.1 | |
| HL_9PR4_035 | 1/A/3081:3086 | GNRA | homologous HL_7A0S_062 HL_34789.4 | |
| HL_9PR4_036 | 1/A/3126:3131 | No text annotation | geometric HL_8OI5_061 HL_34789.4 | |
| HL_9PR4_037 | 1/A/3154:3159 | No text annotation | geometric HL_5FMZ_001 HL_19413.2 | |
| HL_9PR4_038 | 1/A/3176:3193 | No text annotation | ||
| HL_9PR4_039 | 1/A/3216:3224 | No text annotation | geometric HL_7A0S_067 HL_37889.1 | |
| HL_9PR4_040 | 1/B/12:23 | tRNA D-loop | homologous HL_5B63_003 HL_20490.1 | |
| HL_9PR4_041 | 1/B/31:39 | tRNA anticodon loop | homologous HL_7VNV_002 HL_81376.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9PR4_024 | No text annotation | ||
| HL_9PR4_027 | GNRA | ||
| HL_9PR4_042 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9PR4_001 | 1/A/1672:1678, 1/A/1797:1816 | No text annotation | ||
| IL_9PR4_002 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_9PR4_003 | 1/A/1739:1745, 1/A/1753:1758 | No text annotation | geometric IL_9E6Q_110 IL_02666.1 | |
| IL_9PR4_004 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.3 | |
| IL_9PR4_005 | 1/A/1877:1879, 1/A/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_01003.4 | |
| IL_9PR4_006 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
| IL_9PR4_007 | 1/A/1904:1906, 1/A/2016:2018 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.4 | |
| IL_9PR4_008 | 1/A/1906:1910, 1/A/2009:2016 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.1 | |
| IL_9PR4_009 | 1/A/1913:1915, 1/A/2004:2006 | Isolated non-canonical cWW pair | geometric IL_7ZLQ_002 IL_01003.4 | |
| IL_9PR4_010 | 1/A/1925:1927, 1/A/1977:1979 | Isolated non-canonical cWW pair | geometric IL_3CUL_008 IL_01003.4 | |
| IL_9PR4_011 | 1/A/1929:1930, 1/A/1973:1975 | Single bulged A | homologous IL_7A0S_016 IL_14190.2 | |
| IL_9PR4_012 | 1/A/1948:1951, 1/A/1966:1968 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_36931.2 | |
| IL_9PR4_013 | 1/A/1985:1987, 1/A/1997:2001 | No text annotation | geometric IL_9E6Q_032 IL_89509.1 | |
| IL_9PR4_014 | 1/A/2046:2048, 1/A/2091:2094 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_9PR4_015 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation | geometric IL_5XWG_002 IL_74768.1 | |
| IL_9PR4_016 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_7A0S_032 IL_05642.3 | |
| IL_9PR4_017 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_9PR4_018 | 1/A/2168:2170, 1/A/2190:2192 | Isolated near basepair | geometric IL_2ZI0_001 IL_42997.5 | |
| IL_9PR4_019 | 1/A/2170:2173, 1/A/2187:2190 | No text annotation | homologous IL_1MMS_003 IL_28482.1 | |
| IL_9PR4_020 | 1/A/2197:2200, 1/A/2211:2212 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_9PR4_021 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.3 | |
| IL_9PR4_022 | 1/A/2329:2333, 1/A/2441:2448 | No text annotation | ||
| IL_9PR4_023 | 1/A/2349:2351, 1/A/2362:2364 | No text annotation | ||
| IL_9PR4_024 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
| IL_9PR4_025 | 1/A/2384:2400, 1/A/2403:2408 | No text annotation | ||
| IL_9PR4_026 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
| IL_9PR4_027 | 1/A/2467:2469, 1/A/2658:2660 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_9PR4_028 | 1/A/2470:2473, 1/A/2656:2657 | No text annotation | geometric IL_9E6Q_063 IL_74641.2 | |
| IL_9PR4_029 | 1/A/2470:2478, 1/A/2653:2657 | No text annotation | geometric IL_8GLP_305 IL_80252.1 | |
| IL_9PR4_030 | 1/A/2473:2478, 1/A/2653:2656 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.1 | |
| IL_9PR4_031 | 1/A/2478:2487, 1/A/2648:2653 | No text annotation | ||
| IL_9PR4_032 | 1/A/2490:2491, 1/A/2643:2645 | Single bulged A | homologous IL_7A0S_064 IL_14190.2 | |
| IL_9PR4_033 | 1/A/2548:2551, 1/A/2566:2567 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.1 | |
| IL_9PR4_034 | 1/A/2552:2553, 1/A/2562:2565 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.1 | |
| IL_9PR4_035 | 1/A/2596:2597, 1/A/2627:2630 | No text annotation | geometric IL_8ZAU_001 IL_05670.1 | |
| IL_9PR4_036 | 1/A/2597:2608, 1/A/2624:2627 | No text annotation | ||
| IL_9PR4_037 | 1/A/2712:2715, 1/A/3104:3106 | No text annotation | geometric IL_8OI5_093 IL_75527.2 | |
| IL_9PR4_038 | 1/A/2717:2719, 1/A/3099:3102 | No text annotation | geometric IL_8B0X_140 IL_80025.1 | |
| IL_9PR4_039 | 1/A/2730:2732, 1/A/2929:2930 | Single bulged U | homologous IL_7A0S_075 IL_97561.5 | |
| IL_9PR4_040 | 1/A/2733:2734, 1/A/2925:2928 | Minor groove platform | homologous IL_7A0S_076 IL_34520.3 | |
| IL_9PR4_041 | 1/A/2744:2746, 1/A/2802:2803 | Minor groove platform | geometric IL_7A0S_003 IL_34520.3 | |
| IL_9PR4_042 | 1/A/2753:2758, 1/A/2788:2795 | No text annotation | ||
| IL_9PR4_044 | 1/A/2849:2855, 1/A/2877:2889 | No text annotation | ||
| IL_9PR4_045 | 1/A/2856:2860, 1/A/2872:2876 | No text annotation | geometric IL_8GLP_204 IL_87767.2 | |
| IL_9PR4_046 | 1/A/2940:2941, 1/A/2985:2987 | Single stack bend | homologous IL_7A0S_083 IL_15011.3 | |
| IL_9PR4_047 | 1/A/2941:2942, 1/A/2983:2985 | Major groove platform | homologous IL_7A0S_084 IL_48076.8 | |
| IL_9PR4_048 | 1/A/2943:2946, 1/A/2980:2982 | No text annotation | geometric IL_6DME_003 IL_75527.2 | |
| IL_9PR4_049 | 1/A/2946:2948, 1/A/2976:2980 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.2 | |
| IL_9PR4_050 | 1/A/2953:2955, 1/A/2968:2971 | No text annotation | geometric IL_4V9F_053 IL_49140.1 | |
| IL_9PR4_051 | 1/A/2955:2957, 1/A/2967:2968 | Minor groove platform | geometric IL_2QWY_009 IL_34520.3 | |
| IL_9PR4_052 | 1/A/2994:2995, 1/A/3067:3069 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_9PR4_053 | 1/A/2997:2999, 1/A/3061:3065 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.4 | |
| IL_9PR4_054 | 1/A/2999:3000, 1/A/3058:3061 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.2 | |
| IL_9PR4_055 | 1/A/3008:3010, 1/A/3027:3031 | No text annotation | ||
| IL_9PR4_056 | 1/A/3078:3079, 1/A/3088:3090 | No text annotation | geometric IL_8GLP_097 IL_14190.2 | |
| IL_9PR4_057 | 1/A/3115:3117, 1/A/3139:3141 | No text annotation | geometric IL_9E6Q_036 IL_01003.4 | |
| IL_9PR4_058 | 1/A/3119:3126, 1/A/3131:3137 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_344 IL_62167.3 | |
| IL_9PR4_059 | 1/A/3148:3152, 1/A/3161:3163 | No text annotation | geometric IL_8OI5_117 IL_06671.1 | |
| IL_9PR4_060 | 1/A/3212:3213, 1/A/3227:3230 | Multiple bulged bases | geometric IL_8SP9_001 IL_71421.3 | |
| IL_9PR4_061 | 1/B/28:30, 1/B/40:42 | No text annotation | homologous IL_5E81_376 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9PR4_043 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9PR4_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
| J3_9PR4_002 | 1/A/1684:1722, 1/A/1729:1739, 1/A/1758:1767 | No text annotation | ||
| J3_9PR4_003 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_9PR4_004 | 1/A/1930:1932, 1/A/1942:1946, 1/A/1970:1973 | No text annotation | homologous J3_7A0S_005 J3_69816.1 | |
| J3_9PR4_005 | 1/A/2153:2168, 1/A/2192:2197, 1/A/2212:2248 | No text annotation | ||
| J3_9PR4_006 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
| J3_9PR4_007 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
| J3_9PR4_008 | 1/A/2846:2848, 1/A/2890:2900, 1/A/2909:2915 | No text annotation | ||
| J3_9PR4_009 | 1/A/3004:3007, 1/A/3032:3034, 1/A/3048:3054 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J4_9PR4_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
| J4_9PR4_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
| J4_9PR4_003 | 1/A/2492:2496, 1/A/2508:2513, 1/A/2537:2542, 1/A/2637:2642 | No text annotation | ||
| J4_9PR4_004 | 1/A/2544:2546, 1/A/2569:2570, 1/A/2587:2596, 1/A/2630:2635 | No text annotation | ||
| J4_9PR4_005 | 1/A/3111:3113, 1/A/3143:3144, 1/A/3167:3174, 1/A/3195:3202 | No text annotation | ||
| J4_9PR4_006 | 1/B/7:10, 1/B/25:27, 1/B/43:50, 1/B/64:66 | No text annotation | ||
| J5_9PR4_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9PR4_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
| J5_9PR4_003 | 1/A/2720:2727, 1/A/2933:2940, 1/A/2987:2994, 1/A/3069:3075, 1/A/3093:3098 | No text annotation | ||
| J5_9PR4_004 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2846, 1/A/2915:2922 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9PR4_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2127, 1/A/2138:2143, 1/A/2257:2266 | No text annotation | ||
| J6_9PR4_002 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2848, 1/A/2890:2900, 1/A/2909:2922 | No text annotation |
Problematic loops
No problematic loops
Coloring options: