HL_9PRA_014

3D structure

PDB id

9PRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

9PRA|1|A|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRA_014 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.1433

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PRA|1|A|C|2175
9PRA|1|A|C|2176
9PRA|1|A|U|2177
9PRA|1|A|A|2178
9PRA|1|A|A|2179
9PRA|1|A|A|2180
9PRA|1|A|A|2181
9PRA|1|A|G|2182
9PRA|1|A|C|2183
9PRA|1|A|A|2184
9PRA|1|A|G|2185

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial