HL_9PRA_025

3D structure

PDB id

9PRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

9PRA|1|A|U|2618

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRA_025 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2208

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9PRA|1|A|C|2612
9PRA|1|A|U|2613
9PRA|1|A|U|2614
9PRA|1|A|A|2615
9PRA|1|A|A|2616
9PRA|1|A|1MA|2617
9PRA|1|A|U|2618
9PRA|1|A|A|2619
9PRA|1|A|G|2620

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial