HL_9PRA_028

3D structure

PDB id

9PRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUG(OMG)GGCGA

Length

9 nucleotides

Bulged bases

9PRA|1|A|G|2814

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PRA_028 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0926

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9PRA|1|A|U|2812
9PRA|1|A|U|2813
9PRA|1|A|G|2814
9PRA|1|A|OMG|2815
9PRA|1|A|G|2816
9PRA|1|A|G|2817
9PRA|1|A|C|2818
9PRA|1|A|G|2819
9PRA|1|A|A|2820

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial