HL_9PRQ_060
3D structure
- PDB id
- 9PRQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PRQ_060 not in the Motif Atlas
- Homologous match to HL_3TUP_002
- Geometric discrepancy: 0.261
- The information below is about HL_3TUP_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9PRQ|1|Ah|C|32
9PRQ|1|Ah|C|33
9PRQ|1|Ah|U|34
9PRQ|1|Ah|A|35
9PRQ|1|Ah|A|36
9PRQ|1|Ah|C|37
9PRQ|1|Ah|A|38
9PRQ|1|Ah|C|39
9PRQ|1|Ah|G|40
Current chains
- Chain Ah
- A/T-tRNA
Nearby chains
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain Az
- mRNA
Coloring options: