HL_9PRQ_062
3D structure
- PDB id
- 9PRQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UAAAUAA
- Length
- 7 nucleotides
- Bulged bases
- 9PRQ|1|Ax|U|17
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PRQ_062 not in the Motif Atlas
- Geometric match to HL_3TUP_001
- Geometric discrepancy: 0.3625
- The information below is about HL_3TUP_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PRQ|1|Ax|U|13
9PRQ|1|Ax|A|14
9PRQ|1|Ax|A|15
9PRQ|1|Ax|A|16
9PRQ|1|Ax|U|17
9PRQ|1|Ax|A|18
9PRQ|1|Ax|A|19
Current chains
- Chain Ax
- P/P-tRNA
Nearby chains
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: