HL_9PS7_052

3D structure

PDB id

9PS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9PS7|1|AA|C|1151, 9PS7|1|AA|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PS7_052 not in the Motif Atlas

Geometric match to HL_5E08_001

Geometric discrepancy: 0.3881

The information below is about HL_5E08_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9PS7|1|AA|C|1150
9PS7|1|AA|C|1151
9PS7|1|AA|A|1152
9PS7|1|AA|C|1153
9PS7|1|AA|A|1154
9PS7|1|AA|G|1155

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Aurora kinase A-interacting protein

Chain AL

28S ribosomal protein S15, mitochondrial