HL_9PS7_062

3D structure

PDB id

9PS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PS7_062 not in the Motif Atlas

Homologous match to HL_4TUE_143

Geometric discrepancy: 0.2737

The information below is about HL_4TUE_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9PS7|1|Ah|G|54
9PS7|1|Ah|U|55
9PS7|1|Ah|U|56
9PS7|1|Ah|C|57
9PS7|1|Ah|G|58
9PS7|1|Ah|A|59
9PS7|1|Ah|A|60
9PS7|1|Ah|A|61
9PS7|1|Ah|C|62

Current chains

Chain Ah

A/T-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

Elongation factor Tu, mitochondrial