HL_9PSI_048
3D structure
- PDB id
- 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- UUGUAAAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PSI_048 not in the Motif Atlas
- Geometric match to HL_8B0X_014
- Geometric discrepancy: 0.2199
- The information below is about HL_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9PSI|1|AA|U|989
9PSI|1|AA|U|990
9PSI|1|AA|G|991
9PSI|1|AA|U|992
9PSI|1|AA|A|993
9PSI|1|AA|A|994
9PSI|1|AA|A|995
9PSI|1|AA|A|996
9PSI|1|AA|A|997
9PSI|1|AA|A|998
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AI
- 28S ribosomal protein S11, mitochondrial
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain Ay
- Transfer RNA; tRNA
- Chain Az
- mRNA
Coloring options: