HL_9PSI_050
3D structure
- PDB id
- 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GA(5MU)UAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9PSI|1|AA|U|1081
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PSI_050 not in the Motif Atlas
- Homologous match to HL_6CZR_088
- Geometric discrepancy: 0.1843
- The information below is about HL_6CZR_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9PSI|1|AA|G|1074
9PSI|1|AA|A|1075
9PSI|1|AA|5MU|1076
9PSI|1|AA|U|1077
9PSI|1|AA|A|1078
9PSI|1|AA|G|1079
9PSI|1|AA|A|1080
9PSI|1|AA|U|1081
9PSI|1|AA|A|1082
9PSI|1|AA|C|1083
9PSI|1|AA|C|1084
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AI
- 28S ribosomal protein S11, mitochondrial
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain Ax
- P/P-tRNA
- Chain Ay
- Transfer RNA; tRNA
- Chain Az
- mRNA
Coloring options: