HL_9PSM_007

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

9PSM|1|A|A|1937, 9PSM|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PSM_007 not in the Motif Atlas

Geometric match to HL_9E6Q_023

Geometric discrepancy: 0.363

The information below is about HL_9E6Q_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9PSM|1|A|U|1934
9PSM|1|A|A|1935
9PSM|1|A|A|1936
9PSM|1|A|A|1937
9PSM|1|A|A|1938
9PSM|1|A|G|1939
9PSM|1|A|A|1940

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial