HL_9PZG_006

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9PZG|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_006 not in the Motif Atlas

Geometric match to HL_8B0X_005

Geometric discrepancy: 0.0726

The information below is about HL_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9PZG|1|A|G|259
9PZG|1|A|G|260
9PZG|1|A|U|261
9PZG|1|A|A|262
9PZG|1|A|A|263
9PZG|1|A|C|264
9PZG|1|A|G|265
9PZG|1|A|G|266
9PZG|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20