HL_9PZG_021

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9PZG|1|A|A|968, 9PZG|1|A|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PZG_021 not in the Motif Atlas

Geometric match to HL_8B0X_019

Geometric discrepancy: 0.3776

The information below is about HL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9PZG|1|A|G|963
9PZG|1|A|A|964
9PZG|1|A|U|965
9PZG|1|A|G|966
9PZG|1|A|C|967
9PZG|1|A|A|968
9PZG|1|A|A|969
9PZG|1|A|C|970
9PZG|1|A|G|971
9PZG|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain N

Small ribosomal subunit protein uS14