HL_9Q1Q_028
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|1630, 9Q1Q|1|5|G|1633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_028 not in the Motif Atlas
- Homologous match to HL_9PN5_021
- Geometric discrepancy: 0.1301
- The information below is about HL_9PN5_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28253.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9Q1Q|1|5|G|1627
9Q1Q|1|5|C|1628
9Q1Q|1|5|G|1629
9Q1Q|1|5|A|1630
9Q1Q|1|5|A|1631
9Q1Q|1|5|A|1632
9Q1Q|1|5|G|1633
9Q1Q|1|5|A|1634
9Q1Q|1|5|C|1635
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L15
- Chain j
- 60S ribosomal protein L37
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